Package: rhcoclust 2.0.0

rhcoclust: Robust Hierarchical Co-Clustering to Identify Significant Co-Cluster

Here we performs robust hierarchical co-clustering between row and column entities of a data matrix in absence and presence of outlying observations. It can be used to explore important co-clusters consisting of important samples and their regulatory significant features. Please see Hasan, Badsha and Mollah (2020) <doi:10.1101/2020.05.13.094946>.

Authors:Md. Bahadur Badsha [aut, cre], Mohammad Nazmol Hasan [aut], Md. Nurul Haque Mollah [aut]

rhcoclust_2.0.0.tar.gz
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rhcoclust_2.0.0.tgz(r-4.4-any)rhcoclust_2.0.0.tgz(r-4.3-any)
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rhcoclust.pdf |rhcoclust.html✨
rhcoclust/json (API)

# Install 'rhcoclust' in R:

install.packages('rhcoclust', repos = c('https://mdbahadur.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mdbahadur/rhcoclust/issues

Datasets:

FCGE_Data_GMP - A real glutathione metabolism pathway (GMP) dataset for 'rhcoclust' package
FCGE_Data_PPARs - A real PPAR signaling pathways (PPAR-SP) dataset for 'rhcoclust' package
simu_data - A predefined simulated data for 'rhcoclust' package

On CRAN:

6 exports 1.02 score 17 dependencies 1 mentions 9 scripts 216 downloads

Last updated 2 years agofrom:00af4fccb9. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 12 2024
R-4.5-win	OK	Sep 12 2024
R-4.5-linux	OK	Sep 12 2024
R-4.4-win	OK	Sep 12 2024
R-4.4-mac	OK	Sep 12 2024
R-4.3-win	OK	Sep 12 2024
R-4.3-mac	OK	Sep 12 2024

Exports:plot_rhcoclust reversestring rhcoclust rhcoclust_internet rhcoclust_network simulate_data

Dependencies:cli cpp11 dotCall64 fields glue igraph lattice lifecycle magrittr maps Matrix pkgconfig Rcpp rlang spam vctrs viridisLite

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
A real glutathione metabolism pathway (GMP) dataset for 'rhcoclust' package	FCGE_Data_GMP
A real PPAR signaling pathways (PPAR-SP) dataset for 'rhcoclust' package	FCGE_Data_PPARs
Plot of the 'rhcoclust' objects	plot_rhcoclust
Reverse given string	reversestring
The function for co-clustering sample and feature to explore significant samples and their regulatory features	rhcoclust
Interaction network (internet) of the 'rhcoclust' objects	rhcoclust_internet
Visualization of clustering network plot	rhcoclust_network
A predefined simulated data for 'rhcoclust' package	simu_data
Simulate data for robust hirarachical clustering to identify significant co-cluster	simulate_data