Package: rhcoclust 2.0.0
rhcoclust: Robust Hierarchical Co-Clustering to Identify Significant Co-Cluster
Here we performs robust hierarchical co-clustering between row and column entities of a data matrix in absence and presence of outlying observations. It can be used to explore important co-clusters consisting of important samples and their regulatory significant features. Please see Hasan, Badsha and Mollah (2020) <doi:10.1101/2020.05.13.094946>.
Authors:
rhcoclust_2.0.0.tar.gz
rhcoclust_2.0.0.zip(r-4.5)rhcoclust_2.0.0.zip(r-4.4)rhcoclust_2.0.0.zip(r-4.3)
rhcoclust_2.0.0.tgz(r-4.4-any)rhcoclust_2.0.0.tgz(r-4.3-any)
rhcoclust_2.0.0.tar.gz(r-4.5-noble)rhcoclust_2.0.0.tar.gz(r-4.4-noble)
rhcoclust_2.0.0.tgz(r-4.4-emscripten)rhcoclust_2.0.0.tgz(r-4.3-emscripten)
rhcoclust.pdf |rhcoclust.html✨
rhcoclust/json (API)
| # Install 'rhcoclust' in R: |
| install.packages('rhcoclust', repos = c('https://mdbahadur.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mdbahadur/rhcoclust/issues
- FCGE_Data_GMP - A real glutathione metabolism pathway (GMP) dataset for 'rhcoclust' package
- FCGE_Data_PPARs - A real PPAR signaling pathways (PPAR-SP) dataset for 'rhcoclust' package
- simu_data - A predefined simulated data for 'rhcoclust' package
Last updated 2 years agofrom:00af4fccb9. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 11 2024 |
| R-4.5-win | OK | Nov 11 2024 |
| R-4.5-linux | OK | Nov 11 2024 |
| R-4.4-win | OK | Nov 11 2024 |
| R-4.4-mac | OK | Nov 11 2024 |
| R-4.3-win | OK | Nov 11 2024 |
| R-4.3-mac | OK | Nov 11 2024 |
Exports:plot_rhcoclustreversestringrhcoclustrhcoclust_internetrhcoclust_networksimulate_data
Dependencies:clicpp11dotCall64fieldsglueigraphlatticelifecyclemagrittrmapsMatrixpkgconfigRcpprlangspamvctrsviridisLite
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A real glutathione metabolism pathway (GMP) dataset for 'rhcoclust' package | FCGE_Data_GMP |
| A real PPAR signaling pathways (PPAR-SP) dataset for 'rhcoclust' package | FCGE_Data_PPARs |
| Plot of the 'rhcoclust' objects | plot_rhcoclust |
| Reverse given string | reversestring |
| The function for co-clustering sample and feature to explore significant samples and their regulatory features | rhcoclust |
| Interaction network (internet) of the 'rhcoclust' objects | rhcoclust_internet |
| Visualization of clustering network plot | rhcoclust_network |
| A predefined simulated data for 'rhcoclust' package | simu_data |
| Simulate data for robust hirarachical clustering to identify significant co-cluster | simulate_data |
