Package: rhcoclust 2.0.0

rhcoclust: Robust Hierarchical Co-Clustering to Identify Significant Co-Cluster

Here we performs robust hierarchical co-clustering between row and column entities of a data matrix in absence and presence of outlying observations. It can be used to explore important co-clusters consisting of important samples and their regulatory significant features. Please see Hasan, Badsha and Mollah (2020) <doi:10.1101/2020.05.13.094946>.

Authors:Md. Bahadur Badsha [aut, cre], Mohammad Nazmol Hasan [aut], Md. Nurul Haque Mollah [aut]

rhcoclust_2.0.0.tar.gz
rhcoclust_2.0.0.zip(r-4.7)rhcoclust_2.0.0.zip(r-4.6)rhcoclust_2.0.0.zip(r-4.5)
rhcoclust_2.0.0.tgz(r-4.6-any)rhcoclust_2.0.0.tgz(r-4.5-any)
rhcoclust_2.0.0.tar.gz(r-4.7-any)rhcoclust_2.0.0.tar.gz(r-4.6-any)
rhcoclust_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rhcoclust/json (API)

# Install 'rhcoclust' in R:

install.packages('rhcoclust', repos = c('https://mdbahadur.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mdbahadur/rhcoclust/issues

Datasets:

FCGE_Data_GMP - A real glutathione metabolism pathway (GMP) dataset for 'rhcoclust' package
FCGE_Data_PPARs - A real PPAR signaling pathways (PPAR-SP) dataset for 'rhcoclust' package
simu_data - A predefined simulated data for 'rhcoclust' package

On CRAN:

2.70 score 9 scripts 178 downloads 1 mentions 6 exports 18 dependencies

Last updated from:00af4fccb9. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	180
source / vignettes	OK	165
linux-release-x86_64	OK	127
macos-release-arm64	OK	171
macos-oldrel-arm64	OK	281
windows-devel	OK	79
windows-release	OK	71
windows-oldrel	OK	103
wasm-release	OK	105

Exports:plot_rhcoclust reversestring rhcoclust rhcoclust_internet rhcoclust_network simulate_data

Dependencies:cli cpp11 dotCall64 fields glue igraph lattice lifecycle magrittr maps Matrix pkgconfig RColorBrewer Rcpp rlang spam vctrs viridisLite

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
A real glutathione metabolism pathway (GMP) dataset for 'rhcoclust' package	FCGE_Data_GMP
A real PPAR signaling pathways (PPAR-SP) dataset for 'rhcoclust' package	FCGE_Data_PPARs
Plot of the 'rhcoclust' objects	plot_rhcoclust
Reverse given string	reversestring
The function for co-clustering sample and feature to explore significant samples and their regulatory features	rhcoclust
Interaction network (internet) of the 'rhcoclust' objects	rhcoclust_internet
Visualization of clustering network plot	rhcoclust_network
A predefined simulated data for 'rhcoclust' package	simu_data
Simulate data for robust hirarachical clustering to identify significant co-cluster	simulate_data